Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 SPDYE21P-201ENST00000413323 827 ntBASIC16.45■□□□□ 0.22
PROM1O43490 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.45■□□□□ 0.22
PROM1O43490 AC106795.1-205ENST00000512851 1056 ntBASIC16.45■□□□□ 0.22
PROM1O43490 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.45■□□□□ 0.22
PROM1O43490 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.45■□□□□ 0.22
PROM1O43490 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.45■□□□□ 0.22
PROM1O43490 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PROM1O43490 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
PROM1O43490 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PROM1O43490 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PROM1O43490 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PROM1O43490 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
PROM1O43490 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
PROM1O43490 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 AC116353.5-201ENST00000638148 1699 ntBASIC16.44■□□□□ 0.22
PROM1O43490 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.44■□□□□ 0.22
PROM1O43490 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.44■□□□□ 0.22
PROM1O43490 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.44■□□□□ 0.22
PROM1O43490 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.44■□□□□ 0.22
PROM1O43490 AL020989.1-201ENST00000422979 469 ntBASIC16.44■□□□□ 0.22
PROM1O43490 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.44■□□□□ 0.22
PROM1O43490 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.44■□□□□ 0.22
PROM1O43490 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.44■□□□□ 0.22
PROM1O43490 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
PROM1O43490 AC073592.4-201ENST00000623827 446 ntBASIC16.44■□□□□ 0.22
PROM1O43490 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.44■□□□□ 0.22
PROM1O43490 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
PROM1O43490 AC079776.2-201ENST00000641154 1609 ntBASIC16.44■□□□□ 0.22
PROM1O43490 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.44■□□□□ 0.22
PROM1O43490 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PROM1O43490 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PROM1O43490 SIGLEC16-201ENST00000599858 1437 ntBASIC16.44■□□□□ 0.22
PROM1O43490 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 AL135999.2-201ENST00000622438 1686 ntBASIC16.43■□□□□ 0.22
PROM1O43490 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.43■□□□□ 0.22
PROM1O43490 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 RBM17P3-201ENST00000417687 1192 ntBASIC16.43■□□□□ 0.22
PROM1O43490 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.43■□□□□ 0.22
PROM1O43490 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.43■□□□□ 0.22
PROM1O43490 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.43■□□□□ 0.22
PROM1O43490 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PROM1O43490 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PROM1O43490 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.43■□□□□ 0.22
PROM1O43490 AC148477.5-201ENST00000625164 1645 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms