Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 IGLL3P-201ENST00000412472 434 ntBASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AC010507.1-201ENST00000633895 436 ntBASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.3■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MCCD1P2-201ENST00000423228 335 ntBASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 OR7E47P-204ENST00000575924 449 ntBASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AC007064.4-201ENST00000637740 555 ntBASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.29■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PAWRP1-201ENST00000451083 565 ntBASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 NEFHP1-201ENST00000412845 2629 ntBASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 BCAR1-209ENST00000546196 1340 ntBASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 AC112482.1-201ENST00000492080 688 ntBASIC17.27■□□□□ 0.36
C1QTNF3-AMACRE9PGA6 CXCL1P1-201ENST00000502804 216 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms