Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 AC018845.2-201ENST00000568326 409 ntBASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 AL596442.2-201ENST00000610240 980 ntBASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 AC116407.2-201ENST00000613639 860 ntBASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 AC004790.2-201ENST00000623588 572 ntBASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TM9SF3Q9HD45 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 HTR7P1-202ENST00000624664 4411 ntBASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ALG1L5P-201ENST00000482043 771 ntBASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 YBX1P5-201ENST00000509441 847 ntBASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TM9SF3Q9HD45 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 AC100803.2-201ENST00000562459 1963 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 STK19B-204ENST00000512515 211 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 MIR4469-201ENST00000583919 79 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 STK25P1-201ENST00000585406 838 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 AL513190.1-201ENST00000621254 727 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 BX276092.7-203ENST00000637198 1536 ntBASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TM9SF3Q9HD45 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms