Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CHMP1AQ9HD42 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CHMP1AQ9HD42 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CHMP1AQ9HD42 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CHMP1AQ9HD42 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 LINC00304-203ENST00000565008 1864 ntBASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 MIR4497-201ENST00000583208 89 ntBASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 FAM87A-204ENST00000613235 858 ntBASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 AC105020.1-201ENST00000435356 2205 ntBASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 DOC2GP-204ENST00000639052 2548 ntBASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.98□□□□□ -0.01
CHMP1AQ9HD42 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 LINC01451-201ENST00000623792 534 ntBASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 PCDHA14-201ENST00000506751 2298 ntBASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CHMP1AQ9HD42 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms