Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 AC067852.2-201ENST00000590513 2313 ntBASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 AL133373.2-201ENST00000623187 2828 ntBASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PAAF1Q9BRP4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 AC092902.6-201ENST00000641783 218 ntBASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PAAF1Q9BRP4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 SLC25A1P3-201ENST00000395415 828 ntBASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 AC254562.1-201ENST00000417586 456 ntBASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 SNHG9-202ENST00000564014 471 ntBASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 AP002472.1-201ENST00000577490 586 ntBASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PAAF1Q9BRP4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms