Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 APTR-205ENST00000447009 902 ntTSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 AC008040.2-201ENST00000461049 708 ntBASIC13.16□□□□□ -0.3
AP1S3Q96PC3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 AP000692.2-201ENST00000608391 879 ntBASIC13.16□□□□□ -0.3
AP1S3Q96PC3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.16□□□□□ -0.3
AP1S3Q96PC3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 RN7SL471P-201ENST00000580476 299 ntBASIC13.15□□□□□ -0.3
AP1S3Q96PC3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 DGCR10-201ENST00000609839 495 ntBASIC13.15□□□□□ -0.3
AP1S3Q96PC3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 AC096733.2-201ENST00000609937 1394 ntBASIC13.15□□□□□ -0.3
AP1S3Q96PC3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AP1S3Q96PC3 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
AP1S3Q96PC3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.15□□□□□ -0.31
AP1S3Q96PC3 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
AP1S3Q96PC3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.15□□□□□ -0.31
AP1S3Q96PC3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 KRT8P7-201ENST00000533003 1432 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AL121761.2-201ENST00000598007 1648 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 PCDHB19P-201ENST00000570871 2371 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AC005052.1-201ENST00000625181 2492 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 ESRRAP1-201ENST00000400596 1257 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AC011506.1-201ENST00000474329 610 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 AF186192.3-201ENST00000583427 947 ntBASIC13.14□□□□□ -0.31
AP1S3Q96PC3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
AP1S3Q96PC3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms