Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 AL390719.2-201ENST00000606993 987 ntBASIC18.72■□□□□ 0.59
CCDC42Q96M95 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC42Q96M95 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC42Q96M95 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 AL137013.1-201ENST00000432946 1228 ntBASIC18.71■□□□□ 0.59
CCDC42Q96M95 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 AC109462.3-201ENST00000573934 613 ntBASIC18.71■□□□□ 0.59
CCDC42Q96M95 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC42Q96M95 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC42Q96M95 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 RNF216P1-203ENST00000404404 2427 ntBASIC18.7■□□□□ 0.58
CCDC42Q96M95 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 AC019129.2-201ENST00000609837 1235 ntBASIC18.7■□□□□ 0.58
CCDC42Q96M95 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 Z83836.1-201ENST00000624605 1642 ntBASIC18.7■□□□□ 0.58
CCDC42Q96M95 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC42Q96M95 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC42Q96M95 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 AL603756.1-201ENST00000606511 2163 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC092068.3-201ENST00000587894 2016 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC113347.1-201ENST00000413321 391 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC117947.1-201ENST00000427448 529 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC007967.3-201ENST00000434308 558 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 HOMER2P1-201ENST00000455653 964 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms