Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM43Q96BQ3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 IGHV3-71-201ENST00000523324 359 ntBASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 MIR6799-201ENST00000620297 69 ntBASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM43Q96BQ3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM43Q96BQ3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 SPDYE12P-201ENST00000618416 771 ntBASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 REXO1L11P-201ENST00000620964 1927 ntBASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM43Q96BQ3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM43Q96BQ3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM43Q96BQ3 REXO1L9P-201ENST00000604264 2108 ntBASIC18.59■□□□□ 0.57
TRIM43Q96BQ3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM43Q96BQ3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms