Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 AL049757.1-201ENST00000616842 1596 ntBASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPS4Y2Q8TD47 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 FRMD8P1-201ENST00000440433 1524 ntBASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 AC073508.3-201ENST00000619697 1419 ntBASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RPS4Y2Q8TD47 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 MIR1224-201ENST00000408193 85 ntBASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 ZNF444P1-201ENST00000559497 298 ntBASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
RPS4Y2Q8TD47 AC140113.3-201ENST00000605663 199 ntBASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms