Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.39■□□□□ 0.86
SMC1BQ8NDV3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 AC009477.1-201ENST00000452936 217 ntBASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 AC008267.7-201ENST00000624570 1194 ntBASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.39■□□□□ 0.85
SMC1BQ8NDV3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 DUTP2-201ENST00000519164 463 ntBASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 MIR4259-201ENST00000584466 101 ntBASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 AC099568.2-201ENST00000609194 695 ntBASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
SMC1BQ8NDV3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 KRT8P44-201ENST00000441609 1350 ntBASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 MIR346-201ENST00000362234 95 ntBASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 AP005482.1-201ENST00000563722 1273 ntBASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 AL009183.1-201ENST00000603760 355 ntBASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC1BQ8NDV3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AL158211.5-201ENST00000623583 2518 ntBASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms