Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL132655.2-201ENST00000596276 594 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 FRMD8P1-201ENST00000440433 1524 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC104794.3-201ENST00000566840 1248 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC004790.1-201ENST00000612686 536 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL353732.1-201ENST00000569618 1459 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 SLC22A20-204ENST00000530038 1673 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC105233.2-201ENST00000523697 349 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AF228730.5-201ENST00000530288 346 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AL161645.1-201ENST00000622716 1255 ntBASIC11.49□□□□□ -0.57
VPS13DQ5THJ4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 MIR4515-201ENST00000584082 81 ntBASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 MIR1909-201ENST00000411312 80 ntBASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 U91328.1-201ENST00000437528 223 ntBASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 AC069120.2-201ENST00000524091 540 ntBASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 SNX12-206ENST00000622259 661 ntTSL 5 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
VPS13DQ5THJ4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13DQ5THJ4 AC090164.3-201ENST00000610780 2143 ntBASIC11.47□□□□□ -0.57
VPS13DQ5THJ4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC11.47□□□□□ -0.57
VPS13DQ5THJ4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13DQ5THJ4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13DQ5THJ4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms