Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 AC091607.1-201ENST00000490318 1060 ntBASIC20.04■□□□□ 0.8
SF3A1Q15459 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 AC011840.4-201ENST00000578471 627 ntBASIC20.04■□□□□ 0.8
SF3A1Q15459 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.04■□□□□ 0.8
SF3A1Q15459 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SF3A1Q15459 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.03■□□□□ 0.8
SF3A1Q15459 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SF3A1Q15459 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SF3A1Q15459 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SF3A1Q15459 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.03■□□□□ 0.8
SF3A1Q15459 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.03■□□□□ 0.8
SF3A1Q15459 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.03■□□□□ 0.8
SF3A1Q15459 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.03■□□□□ 0.8
SF3A1Q15459 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.03■□□□□ 0.8
SF3A1Q15459 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 AC016734.2-201ENST00000624325 1377 ntBASIC20.03■□□□□ 0.8
SF3A1Q15459 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
SF3A1Q15459 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SF3A1Q15459 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SF3A1Q15459 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SF3A1Q15459 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.03■□□□□ 0.8
SF3A1Q15459 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.02■□□□□ 0.8
SF3A1Q15459 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.02■□□□□ 0.8
SF3A1Q15459 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 AC109462.3-201ENST00000573934 613 ntBASIC20.02■□□□□ 0.8
SF3A1Q15459 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
SF3A1Q15459 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.02■□□□□ 0.8
SF3A1Q15459 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SF3A1Q15459 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.02■□□□□ 0.8
SF3A1Q15459 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SF3A1Q15459 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SF3A1Q15459 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SF3A1Q15459 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.02■□□□□ 0.79
SF3A1Q15459 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 AC116353.5-201ENST00000638148 1699 ntBASIC20.01■□□□□ 0.79
SF3A1Q15459 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 BX276092.5-203ENST00000456199 560 ntBASIC20.01■□□□□ 0.79
SF3A1Q15459 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 IGHV3-52-201ENST00000519770 353 ntBASIC20.01■□□□□ 0.79
SF3A1Q15459 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.01■□□□□ 0.79
SF3A1Q15459 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SF3A1Q15459 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.01■□□□□ 0.79
SF3A1Q15459 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
SF3A1Q15459 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms