Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 LINC00167-201ENST00000530583 1419 ntBASIC13.06□□□□□ -0.32
FOXA3P55318 LINC01311-201ENST00000565162 1445 ntBASIC13.06□□□□□ -0.32
FOXA3P55318 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 FDX2-207ENST00000494368 584 ntTSL 4 BASIC13.06□□□□□ -0.32
FOXA3P55318 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.06□□□□□ -0.32
FOXA3P55318 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.06□□□□□ -0.32
FOXA3P55318 AC124016.1-201ENST00000609552 612 ntBASIC13.06□□□□□ -0.32
FOXA3P55318 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
FOXA3P55318 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
FOXA3P55318 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA3P55318 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.05□□□□□ -0.32
FOXA3P55318 AC067930.6-201ENST00000623257 4947 ntBASIC13.05□□□□□ -0.32
FOXA3P55318 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 AL136379.1-201ENST00000623471 2642 ntBASIC13.05□□□□□ -0.32
FOXA3P55318 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC13.05□□□□□ -0.32
FOXA3P55318 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.05□□□□□ -0.32
FOXA3P55318 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA3P55318 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA3P55318 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA3P55318 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms