Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 AC012569.1-201ENST00000591191 1524 ntBASIC17.12■□□□□ 0.33
CXCL12P48061 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.12■□□□□ 0.33
CXCL12P48061 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.12■□□□□ 0.33
CXCL12P48061 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 CR383656.12-201ENST00000549567 513 ntBASIC17.12■□□□□ 0.33
CXCL12P48061 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 AL008721.1-201ENST00000609964 604 ntBASIC17.12■□□□□ 0.33
CXCL12P48061 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL12P48061 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CXCL12P48061 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CXCL12P48061 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CXCL12P48061 AC138932.1-201ENST00000534164 6830 ntBASIC17.12■□□□□ 0.33
CXCL12P48061 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL12P48061 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL12P48061 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.11■□□□□ 0.33
CXCL12P48061 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.11■□□□□ 0.33
CXCL12P48061 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.11■□□□□ 0.33
CXCL12P48061 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CXCL12P48061 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CXCL12P48061 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.11■□□□□ 0.33
CXCL12P48061 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.11■□□□□ 0.33
CXCL12P48061 AL139327.4-201ENST00000612362 153 ntBASIC17.11■□□□□ 0.33
CXCL12P48061 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.11■□□□□ 0.33
CXCL12P48061 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CXCL12P48061 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL12P48061 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.11■□□□□ 0.33
CXCL12P48061 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.1■□□□□ 0.33
CXCL12P48061 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.1■□□□□ 0.33
CXCL12P48061 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL12P48061 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL12P48061 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.1■□□□□ 0.33
CXCL12P48061 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CXCL12P48061 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL12P48061 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.1■□□□□ 0.33
CXCL12P48061 ALG1L8P-201ENST00000533887 760 ntBASIC17.1■□□□□ 0.33
CXCL12P48061 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL12P48061 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL12P48061 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL12P48061 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.1■□□□□ 0.33
CXCL12P48061 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CXCL12P48061 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CXCL12P48061 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms