Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HTTP42858 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 RN7SL752P-201ENST00000463779 287 ntBASIC19.23■□□□□ 0.67
HTTP42858 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.23■□□□□ 0.67
HTTP42858 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC19.23■□□□□ 0.67
HTTP42858 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HTTP42858 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HTTP42858 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.23■□□□□ 0.67
HTTP42858 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
HTTP42858 FOXO1B-201ENST00000504678 1527 ntBASIC19.23■□□□□ 0.67
HTTP42858 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.23■□□□□ 0.67
HTTP42858 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.23■□□□□ 0.67
HTTP42858 WASH4P-201ENST00000564273 1246 ntBASIC19.23■□□□□ 0.67
HTTP42858 AC099568.2-201ENST00000609194 695 ntBASIC19.23■□□□□ 0.67
HTTP42858 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.23■□□□□ 0.67
HTTP42858 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.23■□□□□ 0.67
HTTP42858 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.23■□□□□ 0.67
HTTP42858 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.23■□□□□ 0.67
HTTP42858 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.22■□□□□ 0.67
HTTP42858 AL020996.1-203ENST00000536896 2307 ntBASIC19.22■□□□□ 0.67
HTTP42858 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HTTP42858 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.22■□□□□ 0.67
HTTP42858 ANKRD19P-201ENST00000338192 862 ntBASIC19.22■□□□□ 0.67
HTTP42858 AL353779.1-201ENST00000434793 351 ntBASIC19.22■□□□□ 0.67
HTTP42858 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HTTP42858 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.22■□□□□ 0.67
HTTP42858 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC19.22■□□□□ 0.67
HTTP42858 RAB43P1-201ENST00000561790 589 ntBASIC19.22■□□□□ 0.67
HTTP42858 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.22■□□□□ 0.67
HTTP42858 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.22■□□□□ 0.67
HTTP42858 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.22■□□□□ 0.67
HTTP42858 AC002558.1-201ENST00000488906 803 ntBASIC19.22■□□□□ 0.67
HTTP42858 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.22■□□□□ 0.67
HTTP42858 MIR4538-201ENST00000581377 78 ntBASIC19.22■□□□□ 0.67
HTTP42858 AC008494.3-201ENST00000606615 944 ntBASIC19.22■□□□□ 0.67
HTTP42858 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HTTP42858 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.21■□□□□ 0.67
HTTP42858 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HTTP42858 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HTTP42858 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 SPDYE18-201ENST00000510091 1050 ntBASIC19.21■□□□□ 0.67
HTTP42858 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HTTP42858 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC19.21■□□□□ 0.67
HTTP42858 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.21■□□□□ 0.67
HTTP42858 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.21■□□□□ 0.67
HTTP42858 AC007967.4-201ENST00000614700 386 ntBASIC19.21■□□□□ 0.67
HTTP42858 AC073592.8-201ENST00000624126 511 ntBASIC19.21■□□□□ 0.67
HTTP42858 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HTTP42858 LINC00896-202ENST00000609602 2128 ntBASIC19.21■□□□□ 0.67
HTTP42858 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HTTP42858 FAM86MP-201ENST00000340703 885 ntBASIC19.2■□□□□ 0.66
HTTP42858 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 MPV17-208ENST00000405076 603 ntTSL 5 BASIC19.2■□□□□ 0.66
HTTP42858 HMGA1P7-201ENST00000406908 502 ntBASIC19.2■□□□□ 0.66
HTTP42858 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC19.2■□□□□ 0.66
HTTP42858 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC19.2■□□□□ 0.66
HTTP42858 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.2■□□□□ 0.66
HTTP42858 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.2■□□□□ 0.66
HTTP42858 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 AL844908.2-201ENST00000609461 460 ntBASIC19.2■□□□□ 0.66
HTTP42858 AC008267.7-201ENST00000624570 1194 ntBASIC19.2■□□□□ 0.66
HTTP42858 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.2■□□□□ 0.66
HTTP42858 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
HTTP42858 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.2■□□□□ 0.66
HTTP42858 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms