Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL2A1P02458 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL2A1P02458 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 AL592309.1-201ENST00000443127 649 ntBASIC20.02■□□□□ 0.8
COL2A1P02458 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.02■□□□□ 0.8
COL2A1P02458 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.02■□□□□ 0.8
COL2A1P02458 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.02■□□□□ 0.8
COL2A1P02458 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.02■□□□□ 0.8
COL2A1P02458 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.02■□□□□ 0.8
COL2A1P02458 AC004449.1-201ENST00000564240 433 ntBASIC20.02■□□□□ 0.8
COL2A1P02458 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.02■□□□□ 0.8
COL2A1P02458 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL2A1P02458 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
COL2A1P02458 WASH6P-202ENST00000359512 1437 ntBASIC20.02■□□□□ 0.79
COL2A1P02458 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
COL2A1P02458 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.01■□□□□ 0.79
COL2A1P02458 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.01■□□□□ 0.79
COL2A1P02458 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.01■□□□□ 0.79
COL2A1P02458 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.01■□□□□ 0.79
COL2A1P02458 AC092474.2-201ENST00000424288 719 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 AC244107.1-201ENST00000442033 332 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 FAM86GP-201ENST00000448322 971 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 AC087641.1-201ENST00000557561 1021 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 KRT8P23-201ENST00000560090 1207 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 AC051619.7-201ENST00000568314 623 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 Z92544.3-201ENST00000624747 417 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 AL390961.4-201ENST00000623958 2535 ntBASIC20.01■□□□□ 0.79
COL2A1P02458 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.01■□□□□ 0.79
COL2A1P02458 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL2A1P02458 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL2A1P02458 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20■□□□□ 0.79
COL2A1P02458 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 PMS2P4-201ENST00000412466 1052 ntBASIC20■□□□□ 0.79
COL2A1P02458 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 LINC01225-203ENST00000563550 1244 ntBASIC20■□□□□ 0.79
COL2A1P02458 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20■□□□□ 0.79
COL2A1P02458 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20■□□□□ 0.79
COL2A1P02458 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL2A1P02458 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20■□□□□ 0.79
COL2A1P02458 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
COL2A1P02458 FRMD8P1-201ENST00000440433 1524 ntBASIC20■□□□□ 0.79
COL2A1P02458 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20■□□□□ 0.79
COL2A1P02458 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 FAM58DP-201ENST00000428076 619 ntBASIC19.99■□□□□ 0.79
COL2A1P02458 CNN2P2-201ENST00000443536 909 ntBASIC19.99■□□□□ 0.79
COL2A1P02458 CNN2P3-201ENST00000450201 906 ntBASIC19.99■□□□□ 0.79
COL2A1P02458 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.99■□□□□ 0.79
COL2A1P02458 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 AC005498.2-205ENST00000593218 784 ntBASIC19.99■□□□□ 0.79
COL2A1P02458 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.99■□□□□ 0.79
COL2A1P02458 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 AL136317.3-201ENST00000618497 906 ntBASIC19.99■□□□□ 0.79
COL2A1P02458 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL2A1P02458 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.99■□□□□ 0.79
COL2A1P02458 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL2A1P02458 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.99■□□□□ 0.79
COL2A1P02458 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.99■□□□□ 0.79
COL2A1P02458 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms