Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.79■□□□□ 0.28
LDLRP01130 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.79■□□□□ 0.28
LDLRP01130 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 LINC00304-203ENST00000565008 1864 ntBASIC16.79■□□□□ 0.28
LDLRP01130 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 HLA-J-201ENST00000462773 1622 ntBASIC16.78■□□□□ 0.28
LDLRP01130 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 MRPL3P1-201ENST00000400109 1033 ntBASIC16.78■□□□□ 0.28
LDLRP01130 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 LINC00265-3P-201ENST00000447588 903 ntBASIC16.78■□□□□ 0.28
LDLRP01130 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.78■□□□□ 0.28
LDLRP01130 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.78■□□□□ 0.28
LDLRP01130 AC012615.1-201ENST00000565797 1299 ntBASIC16.78■□□□□ 0.28
LDLRP01130 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.78■□□□□ 0.28
LDLRP01130 AC120114.3-201ENST00000611923 658 ntBASIC16.78■□□□□ 0.28
LDLRP01130 BX640515.1-201ENST00000617215 977 ntBASIC16.78■□□□□ 0.28
LDLRP01130 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LDLRP01130 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LDLRP01130 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
LDLRP01130 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LDLRP01130 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDLRP01130 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.77■□□□□ 0.28
LDLRP01130 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.77■□□□□ 0.28
LDLRP01130 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.77■□□□□ 0.28
LDLRP01130 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 TSPY22P-201ENST00000427496 604 ntBASIC16.77■□□□□ 0.28
LDLRP01130 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.77■□□□□ 0.28
LDLRP01130 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 AL121912.1-201ENST00000603683 238 ntBASIC16.77■□□□□ 0.28
LDLRP01130 AC024243.1-201ENST00000609234 778 ntBASIC16.77■□□□□ 0.28
LDLRP01130 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.77■□□□□ 0.28
LDLRP01130 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.77■□□□□ 0.28
LDLRP01130 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LDLRP01130 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
LDLRP01130 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.77■□□□□ 0.27
LDLRP01130 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 AC105020.1-201ENST00000435356 2205 ntBASIC16.77■□□□□ 0.27
LDLRP01130 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.77■□□□□ 0.27
LDLRP01130 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
LDLRP01130 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
LDLRP01130 AC046158.3-201ENST00000624947 2558 ntBASIC16.77■□□□□ 0.27
LDLRP01130 AC100803.2-201ENST00000562459 1963 ntBASIC16.77■□□□□ 0.27
LDLRP01130 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.77■□□□□ 0.27
LDLRP01130 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms