Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC24.04■■□□□ 1.44
NPHP4O75161 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC24.04■■□□□ 1.44
NPHP4O75161 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 STX3-203ENST00000529177 1571 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP4O75161 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP4O75161 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP4O75161 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP4O75161 AC011495.1-201ENST00000498085 584 ntBASIC24.03■■□□□ 1.44
NPHP4O75161 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP4O75161 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP4O75161 AC073389.1-201ENST00000595595 795 ntBASIC24.03■■□□□ 1.44
NPHP4O75161 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP4O75161 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
NPHP4O75161 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP4O75161 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP4O75161 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP4O75161 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP4O75161 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
NPHP4O75161 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
NPHP4O75161 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP4O75161 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
NPHP4O75161 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
NPHP4O75161 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 FAM86MP-201ENST00000340703 885 ntBASIC24.02■■□□□ 1.44
NPHP4O75161 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
NPHP4O75161 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC24.02■■□□□ 1.44
NPHP4O75161 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC24.02■■□□□ 1.44
NPHP4O75161 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
NPHP4O75161 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC24.02■■□□□ 1.44
NPHP4O75161 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 AL139327.4-201ENST00000612362 153 ntBASIC24.02■■□□□ 1.44
NPHP4O75161 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP4O75161 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP4O75161 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 SLC22A20-204ENST00000530038 1673 ntBASIC24.02■■□□□ 1.44
NPHP4O75161 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP4O75161 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 AL035456.1-201ENST00000456064 1369 ntBASIC24.02■■□□□ 1.44
NPHP4O75161 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP4O75161 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP4O75161 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 RPL37AP1-201ENST00000412502 279 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC24.01■■□□□ 1.43
NPHP4O75161 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 AC135586.1-201ENST00000539323 574 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC24.01■■□□□ 1.43
NPHP4O75161 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC24.01■■□□□ 1.43
NPHP4O75161 CHCHD2P3-201ENST00000603038 451 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 FOXO1B-201ENST00000504678 1527 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 CETN4P-206ENST00000642099 2168 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
NPHP4O75161 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
NPHP4O75161 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC24.01■■□□□ 1.43
NPHP4O75161 ZNF890P-202ENST00000530367 1156 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC24.01■■□□□ 1.43
NPHP4O75161 AC007431.3-201ENST00000623221 587 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP4O75161 REXO1L6P-201ENST00000603433 1515 ntBASIC24.01■■□□□ 1.43
NPHP4O75161 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC24■■□□□ 1.43
NPHP4O75161 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC24■■□□□ 1.43
NPHP4O75161 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms