Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 AC005104.2-201ENST00000427818 678 ntBASIC15.26■□□□□ 0.03
LMX1BO60663 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.26■□□□□ 0.03
LMX1BO60663 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.26■□□□□ 0.03
LMX1BO60663 AC106795.1-205ENST00000512851 1056 ntBASIC15.26■□□□□ 0.03
LMX1BO60663 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.26■□□□□ 0.03
LMX1BO60663 GPR32P1-201ENST00000601788 811 ntBASIC15.26■□□□□ 0.03
LMX1BO60663 AC099336.1-202ENST00000602961 463 ntBASIC15.26■□□□□ 0.03
LMX1BO60663 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.26■□□□□ 0.03
LMX1BO60663 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LMX1BO60663 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 AGGF1P2-201ENST00000426656 2106 ntBASIC15.25■□□□□ 0.03
LMX1BO60663 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LMX1BO60663 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.25■□□□□ 0.03
LMX1BO60663 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.25■□□□□ 0.03
LMX1BO60663 SLC25A6P4-201ENST00000586535 553 ntBASIC15.25■□□□□ 0.03
LMX1BO60663 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 AL353801.3-201ENST00000609898 542 ntBASIC15.25■□□□□ 0.03
LMX1BO60663 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1BO60663 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
LMX1BO60663 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.25■□□□□ 0.03
LMX1BO60663 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LMX1BO60663 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1BO60663 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 AC233702.3-201ENST00000578656 1387 ntBASIC15.24■□□□□ 0.03
LMX1BO60663 PKD1P1-201ENST00000458669 6805 ntBASIC15.24■□□□□ 0.03
LMX1BO60663 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 AC010460.3-201ENST00000511359 1579 ntBASIC15.24■□□□□ 0.03
LMX1BO60663 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
LMX1BO60663 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms