Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.57■□□□□ 0.4
HOXC11O43248 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
HOXC11O43248 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.57■□□□□ 0.4
HOXC11O43248 AC068137.2-201ENST00000605408 478 ntBASIC17.57■□□□□ 0.4
HOXC11O43248 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC11O43248 AC091812.2-201ENST00000619081 385 ntBASIC17.57■□□□□ 0.4
HOXC11O43248 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC11O43248 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HOXC11O43248 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
HOXC11O43248 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC11O43248 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HOXC11O43248 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC11O43248 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.56■□□□□ 0.4
HOXC11O43248 CNN2P11-201ENST00000429351 262 ntBASIC17.56■□□□□ 0.4
HOXC11O43248 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXC11O43248 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXC11O43248 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC11O43248 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC11O43248 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC11O43248 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
HOXC11O43248 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 KRT18P28-201ENST00000453838 1332 ntBASIC17.55■□□□□ 0.4
HOXC11O43248 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 AL513480.1-201ENST00000451731 511 ntBASIC17.55■□□□□ 0.4
HOXC11O43248 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.55■□□□□ 0.4
HOXC11O43248 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
HOXC11O43248 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC11O43248 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC11O43248 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC11O43248 AL355312.1-201ENST00000407115 2176 ntBASIC17.55■□□□□ 0.4
HOXC11O43248 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC11O43248 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC11O43248 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC11O43248 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HOXC11O43248 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXC11O43248 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC11O43248 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
HOXC11O43248 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC11O43248 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HOXC11O43248 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HOXC11O43248 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC11O43248 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms