Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 AC142086.2-201ENST00000569753 217 ntBASIC12.72□□□□□ -0.37
SMKR1H3BMG3 RN7SL471P-201ENST00000580476 299 ntBASIC12.72□□□□□ -0.37
SMKR1H3BMG3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 AC010240.3-201ENST00000607688 395 ntBASIC12.72□□□□□ -0.37
SMKR1H3BMG3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
SMKR1H3BMG3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 CYP2T1P-202ENST00000641596 2535 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 KRT8P47-201ENST00000604727 1398 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 FAM197Y1-201ENST00000421178 764 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 CA15P1-201ENST00000481698 905 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 AC097488.1-201ENST00000507834 756 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 AC068587.6-202ENST00000641839 5619 ntBASIC12.71□□□□□ -0.37
SMKR1H3BMG3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.71□□□□□ -0.37
SMKR1H3BMG3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 LINC01311-201ENST00000565162 1445 ntBASIC12.71□□□□□ -0.38
SMKR1H3BMG3 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
SMKR1H3BMG3 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 MIR3180-4-201ENST00000582223 153 ntBASIC12.7□□□□□ -0.38
SMKR1H3BMG3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 AL513523.2-202ENST00000427283 2040 ntBASIC12.7□□□□□ -0.38
SMKR1H3BMG3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SMKR1H3BMG3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms