Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 PCDHA12-202ENST00000613593 2588 ntBASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AC112698.1-201ENST00000510299 916 ntBASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AC006557.2-201ENST00000592985 1240 ntBASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 MIR1199-201ENST00000621445 119 ntBASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AL022326.1-202ENST00000641533 845 ntBASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDZRN3Q9UPQ7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 PRYP5-201ENST00000451909 266 ntBASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC22.35■■□□□ 1.17
PDZRN3Q9UPQ7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 MCCD1P2-201ENST00000423228 335 ntBASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 KRT18P27-201ENST00000427733 1299 ntBASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AC007967.2-201ENST00000432613 625 ntBASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AC005593.1-201ENST00000624894 515 ntBASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AC079776.2-201ENST00000641154 1609 ntBASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC22.34■■□□□ 1.17
PDZRN3Q9UPQ7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.33■■□□□ 1.17
PDZRN3Q9UPQ7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms