Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 STK19B-204ENST00000512515 211 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 DUTP2-201ENST00000519164 463 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 AC069262.1-201ENST00000539058 672 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 AC022145.2-201ENST00000598203 171 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 REXO1L3P-201ENST00000622202 1288 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 PHGDH-209ENST00000641074 1780 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 FAM86GP-201ENST00000448322 971 ntBASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC190387.1-201ENST00000551683 408 ntBASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC093520.2-201ENST00000561830 333 ntBASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC019129.2-201ENST00000609837 1235 ntBASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 AL121761.2-201ENST00000598007 1648 ntBASIC18.05■□□□□ 0.48
LIMD1Q9UGP4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AC023141.5-201ENST00000458585 616 ntBASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AC068137.2-201ENST00000605408 478 ntBASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AL353135.1-201ENST00000606729 504 ntBASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 AL133373.2-201ENST00000623187 2828 ntBASIC18.04■□□□□ 0.48
LIMD1Q9UGP4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 PI4KAP1-204ENST00000612579 1703 ntBASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.03■□□□□ 0.48
LIMD1Q9UGP4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms