Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF541Q9H0D2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 AC005412.3-201ENST00000580309 715 ntBASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 AC012569.1-201ENST00000591191 1524 ntBASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 CROCCP3-202ENST00000420820 1947 ntBASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF541Q9H0D2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF541Q9H0D2 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 GPR53P-205ENST00000457298 1084 ntBASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
ZNF541Q9H0D2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 REXO1L11P-201ENST00000620964 1927 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms