Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CETN4P-206ENST00000642099 2168 ntBASIC28.31■■■□□ 2.12
IFT140Q96RY7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 BTBD7P1-201ENST00000447253 1453 ntBASIC28.3■■■□□ 2.12
IFT140Q96RY7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
IFT140Q96RY7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC28.3■■■□□ 2.12
IFT140Q96RY7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC28.3■■■□□ 2.12
IFT140Q96RY7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 RPL37AP1-201ENST00000412502 279 ntBASIC28.3■■■□□ 2.12
IFT140Q96RY7 RN7SL837P-201ENST00000463010 287 ntBASIC28.3■■■□□ 2.12
IFT140Q96RY7 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
IFT140Q96RY7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 REXO1L11P-201ENST00000620964 1927 ntBASIC28.29■■■□□ 2.12
IFT140Q96RY7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 FAM86MP-201ENST00000340703 885 ntBASIC28.29■■■□□ 2.12
IFT140Q96RY7 AC093004.1-201ENST00000508850 424 ntBASIC28.29■■■□□ 2.12
IFT140Q96RY7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 AC007431.3-201ENST00000623221 587 ntBASIC28.29■■■□□ 2.12
IFT140Q96RY7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
IFT140Q96RY7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
IFT140Q96RY7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
IFT140Q96RY7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC28.28■■■□□ 2.12
IFT140Q96RY7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 AC087499.6-201ENST00000411576 835 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 GNAQP1-201ENST00000444815 1067 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 AC135586.1-201ENST00000539323 574 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 CHCHD2P3-201ENST00000603038 451 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 HLA-H-201ENST00000383620 1096 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
IFT140Q96RY7 TTTY23B-201ENST00000442790 549 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 SNX29P1-201ENST00000548357 1007 ntBASIC28.27■■■□□ 2.12
IFT140Q96RY7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC28.27■■■□□ 2.12
IFT140Q96RY7 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
IFT140Q96RY7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
IFT140Q96RY7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC28.26■■■□□ 2.11
IFT140Q96RY7 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
IFT140Q96RY7 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC28.26■■■□□ 2.11
IFT140Q96RY7 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
IFT140Q96RY7 TMEM14DP-201ENST00000422205 345 ntBASIC28.26■■■□□ 2.11
IFT140Q96RY7 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC28.26■■■□□ 2.11
IFT140Q96RY7 AL512343.1-201ENST00000605837 169 ntBASIC28.26■■■□□ 2.11
IFT140Q96RY7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
IFT140Q96RY7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
IFT140Q96RY7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC28.25■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms