Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AC092919.2-201ENST00000623631 1645 ntBASIC17.35■□□□□ 0.37
HMGB4Q8WW32 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AL135999.2-201ENST00000622438 1686 ntBASIC17.35■□□□□ 0.37
HMGB4Q8WW32 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AC006116.8-202ENST00000587620 1550 ntBASIC17.34■□□□□ 0.37
HMGB4Q8WW32 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AC011467.4-201ENST00000594891 528 ntBASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AC092364.2-202ENST00000597012 1073 ntBASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.34■□□□□ 0.37
HMGB4Q8WW32 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 AL513210.1-201ENST00000629608 234 ntBASIC17.34■□□□□ 0.37
HMGB4Q8WW32 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB4Q8WW32 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB4Q8WW32 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB4Q8WW32 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.33■□□□□ 0.37
HMGB4Q8WW32 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
HMGB4Q8WW32 FLJ13224-201ENST00000313737 1514 ntBASIC17.33■□□□□ 0.37
HMGB4Q8WW32 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 AC004461.1-201ENST00000412461 403 ntBASIC17.33■□□□□ 0.36
HMGB4Q8WW32 FAM8A3P-201ENST00000427218 844 ntBASIC17.33■□□□□ 0.36
HMGB4Q8WW32 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 FAM185BP-201ENST00000443595 716 ntBASIC17.33■□□□□ 0.36
HMGB4Q8WW32 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB4Q8WW32 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB4Q8WW32 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms