Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AL596257.1-201ENST00000641463 2694 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 KRT18P23-201ENST00000435622 1283 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC092647.4-201ENST00000457211 535 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 COX11P1-201ENST00000489116 835 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC063952.2-201ENST00000498792 1227 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AL023803.3-201ENST00000615559 522 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC006011.2-201ENST00000621313 1158 ntBASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF540Q8NDQ6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 KRT8P7-201ENST00000533003 1432 ntBASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AC016396.2-201ENST00000562575 1417 ntBASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AP000523.1-201ENST00000398242 1049 ntBASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AC022616.7-201ENST00000525383 220 ntBASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 AL138966.2-201ENST00000621997 464 ntBASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF540Q8NDQ6 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms