Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS52Q8N1B4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 AL020989.1-201ENST00000422979 469 ntBASIC18.83■□□□□ 0.6
VPS52Q8N1B4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 MTDHP5-201ENST00000598980 586 ntBASIC18.83■□□□□ 0.6
VPS52Q8N1B4 AC134684.3-201ENST00000641758 218 ntBASIC18.83■□□□□ 0.6
VPS52Q8N1B4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS52Q8N1B4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS52Q8N1B4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.81■□□□□ 0.6
VPS52Q8N1B4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 KRT18P2-201ENST00000447938 1258 ntBASIC18.81■□□□□ 0.6
VPS52Q8N1B4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS52Q8N1B4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms