Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 PDIA3P1-201ENST00000471856 1510 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 LBH-202ENST00000401506 485 ntTSL 3 BASIC12.36□□□□□ -0.43
PRKDCP78527 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC12.36□□□□□ -0.43
PRKDCP78527 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 AC011495.1-201ENST00000498085 584 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.36□□□□□ -0.43
PRKDCP78527 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.36□□□□□ -0.43
PRKDCP78527 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 AC007389.4-201ENST00000454674 793 ntBASIC12.35□□□□□ -0.43
PRKDCP78527 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
PRKDCP78527 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.35□□□□□ -0.43
PRKDCP78527 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.35□□□□□ -0.43
PRKDCP78527 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.35□□□□□ -0.43
PRKDCP78527 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
PRKDCP78527 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.35□□□□□ -0.43
PRKDCP78527 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PRKDCP78527 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC12.35□□□□□ -0.43
PRKDCP78527 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.34□□□□□ -0.43
PRKDCP78527 AC010319.3-201ENST00000597028 470 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 AL096828.2-201ENST00000567259 1965 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 AC087499.6-201ENST00000411576 835 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 BTBD6P1-201ENST00000412176 1267 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 RPS2P36-201ENST00000456516 831 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC12.34□□□□□ -0.43
PRKDCP78527 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC12.34□□□□□ -0.43
PRKDCP78527 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PRKDCP78527 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 AC104457.1-201ENST00000401024 814 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 RPL37AP1-201ENST00000412502 279 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.34□□□□□ -0.43
PRKDCP78527 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.34□□□□□ -0.43
PRKDCP78527 C2orf69P2-201ENST00000562032 1123 ntBASIC12.34□□□□□ -0.43
PRKDCP78527 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms