Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.03□□□□□ -0.16
CX3CL1P78423 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CX3CL1P78423 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 LINC00304-203ENST00000565008 1864 ntBASIC14.03□□□□□ -0.16
CX3CL1P78423 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.03□□□□□ -0.16
CX3CL1P78423 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CX3CL1P78423 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CX3CL1P78423 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CX3CL1P78423 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CX3CL1P78423 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CX3CL1P78423 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
CX3CL1P78423 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.02□□□□□ -0.16
CX3CL1P78423 PP12613-201ENST00000424958 2230 ntBASIC14.02□□□□□ -0.16
CX3CL1P78423 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.02□□□□□ -0.16
CX3CL1P78423 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.02□□□□□ -0.16
CX3CL1P78423 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CX3CL1P78423 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CX3CL1P78423 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CX3CL1P78423 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.02□□□□□ -0.17
CX3CL1P78423 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.17
CX3CL1P78423 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC14.02□□□□□ -0.17
CX3CL1P78423 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.02□□□□□ -0.17
CX3CL1P78423 PON3-205ENST00000451904 1053 ntTSL 3 BASIC14.02□□□□□ -0.17
CX3CL1P78423 AC104819.1-201ENST00000504587 486 ntBASIC14.02□□□□□ -0.17
CX3CL1P78423 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 AC074051.2-201ENST00000565115 352 ntBASIC14.02□□□□□ -0.17
CX3CL1P78423 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.02□□□□□ -0.17
CX3CL1P78423 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.02□□□□□ -0.17
CX3CL1P78423 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CX3CL1P78423 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CX3CL1P78423 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CX3CL1P78423 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 HLA-J-201ENST00000462773 1622 ntBASIC14.01□□□□□ -0.17
CX3CL1P78423 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CX3CL1P78423 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 FAM220CP-201ENST00000395253 831 ntBASIC14.01□□□□□ -0.17
CX3CL1P78423 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.01□□□□□ -0.17
CX3CL1P78423 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms