Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KRT8P10-201ENST00000450021 1447 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.54■□□□□ 0.08
CLRN1P58418 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CLRN1P58418 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.54■□□□□ 0.08
CLRN1P58418 ATP5G2P1-201ENST00000433580 426 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.54■□□□□ 0.08
CLRN1P58418 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.54■□□□□ 0.08
CLRN1P58418 AC012615.1-201ENST00000565797 1299 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
CLRN1P58418 MIR3180-1-201ENST00000580374 94 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 MIR3180-3-201ENST00000584616 94 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 NPAP1P7-201ENST00000613027 823 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 AC020916.1-201ENST00000587762 1774 ntBASIC15.54■□□□□ 0.08
CLRN1P58418 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 AL049757.1-201ENST00000616842 1596 ntBASIC15.53■□□□□ 0.08
CLRN1P58418 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.53■□□□□ 0.08
CLRN1P58418 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.53■□□□□ 0.08
CLRN1P58418 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 AC046185.3-201ENST00000623228 1824 ntBASIC15.53■□□□□ 0.08
CLRN1P58418 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.53■□□□□ 0.08
CLRN1P58418 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.53■□□□□ 0.08
CLRN1P58418 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.53■□□□□ 0.08
CLRN1P58418 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.53■□□□□ 0.08
CLRN1P58418 AC099336.1-202ENST00000602961 463 ntBASIC15.53■□□□□ 0.08
CLRN1P58418 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.53■□□□□ 0.08
CLRN1P58418 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN1P58418 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.53■□□□□ 0.08
CLRN1P58418 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CLRN1P58418 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CLRN1P58418 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.52■□□□□ 0.08
CLRN1P58418 IGHV3-47-201ENST00000425060 335 ntBASIC15.52■□□□□ 0.08
CLRN1P58418 UPK3BP1-201ENST00000428678 509 ntBASIC15.52■□□□□ 0.08
CLRN1P58418 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN1P58418 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.52■□□□□ 0.08
CLRN1P58418 STK19B-204ENST00000512515 211 ntBASIC15.52■□□□□ 0.08
CLRN1P58418 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.52■□□□□ 0.08
CLRN1P58418 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.52■□□□□ 0.08
CLRN1P58418 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.52■□□□□ 0.08
CLRN1P58418 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 BNIP3P18-201ENST00000593976 575 ntBASIC15.52■□□□□ 0.08
CLRN1P58418 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.52■□□□□ 0.08
CLRN1P58418 AC012313.1-201ENST00000593393 3059 ntBASIC15.52■□□□□ 0.08
CLRN1P58418 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CLRN1P58418 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN1P58418 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.52■□□□□ 0.07
CLRN1P58418 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN1P58418 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.52■□□□□ 0.07
CLRN1P58418 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN1P58418 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN1P58418 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN1P58418 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms