Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXA1P55317 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 FAM220CP-201ENST00000395253 831 ntBASIC16.8■□□□□ 0.28
FOXA1P55317 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
FOXA1P55317 KRT8P26-201ENST00000534154 1276 ntBASIC16.8■□□□□ 0.28
FOXA1P55317 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA1P55317 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA1P55317 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA1P55317 AL353593.2-201ENST00000602529 1483 ntBASIC16.8■□□□□ 0.28
FOXA1P55317 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.79■□□□□ 0.28
FOXA1P55317 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.79■□□□□ 0.28
FOXA1P55317 TMPOP1-202ENST00000424642 1267 ntBASIC16.79■□□□□ 0.28
FOXA1P55317 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 AP005901.3-202ENST00000581653 237 ntBASIC16.79■□□□□ 0.28
FOXA1P55317 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.79■□□□□ 0.28
FOXA1P55317 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.79■□□□□ 0.28
FOXA1P55317 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
FOXA1P55317 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA1P55317 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA1P55317 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 AL135999.2-201ENST00000622438 1686 ntBASIC16.78■□□□□ 0.28
FOXA1P55317 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA1P55317 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 EGFEM1P-202ENST00000431685 1563 ntBASIC16.78■□□□□ 0.28
FOXA1P55317 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 AL031133.1-201ENST00000406807 723 ntBASIC16.78■□□□□ 0.28
FOXA1P55317 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA1P55317 AC103564.2-201ENST00000432853 1299 ntBASIC16.78■□□□□ 0.28
FOXA1P55317 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 LINC01238-205ENST00000567549 1107 ntBASIC16.78■□□□□ 0.28
FOXA1P55317 AC111152.3-201ENST00000569699 673 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms