Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.46□□□□□ -0.1
HOXA1P49639 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HOXA1P49639 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HOXA1P49639 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 FAM45BP-202ENST00000592932 1624 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HOXA1P49639 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 AL355312.1-201ENST00000407115 2176 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 UBE2SP1-201ENST00000450587 669 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXA1P49639 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXA1P49639 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC14.45□□□□□ -0.1
HOXA1P49639 AC104390.1-201ENST00000555663 520 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXA1P49639 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.45□□□□□ -0.1
HOXA1P49639 MIR3180-4-201ENST00000582223 153 ntBASIC14.45□□□□□ -0.1
HOXA1P49639 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HOXA1P49639 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.45□□□□□ -0.1
HOXA1P49639 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXA1P49639 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXA1P49639 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXA1P49639 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA1P49639 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 UNC93B2-201ENST00000285383 730 ntBASIC14.44□□□□□ -0.1
HOXA1P49639 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA1P49639 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA1P49639 BX088651.1-201ENST00000540551 451 ntBASIC14.44□□□□□ -0.1
HOXA1P49639 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA1P49639 AL353719.1-201ENST00000566847 864 ntBASIC14.44□□□□□ -0.1
HOXA1P49639 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC14.44□□□□□ -0.1
HOXA1P49639 AC233702.5-201ENST00000584107 538 ntBASIC14.44□□□□□ -0.1
HOXA1P49639 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HOXA1P49639 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HOXA1P49639 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA1P49639 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA1P49639 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 AGGF1P2-201ENST00000426656 2106 ntBASIC14.44□□□□□ -0.1
HOXA1P49639 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA1P49639 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms