Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A5P29400 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.58■□□□□ 0.88
COL4A5P29400 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A5P29400 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A5P29400 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.58■□□□□ 0.88
COL4A5P29400 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.58■□□□□ 0.88
COL4A5P29400 AL138918.1-201ENST00000568306 659 ntBASIC20.58■□□□□ 0.88
COL4A5P29400 AC022144.1-201ENST00000602255 1580 ntBASIC20.58■□□□□ 0.88
COL4A5P29400 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
COL4A5P29400 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
COL4A5P29400 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 FOXO1B-201ENST00000504678 1527 ntBASIC20.57■□□□□ 0.88
COL4A5P29400 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL4A5P29400 PIN1P1-201ENST00000412108 996 ntBASIC20.57■□□□□ 0.88
COL4A5P29400 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.57■□□□□ 0.88
COL4A5P29400 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A5P29400 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A5P29400 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A5P29400 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A5P29400 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A5P29400 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL4A5P29400 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 LYSMD4-203ENST00000378904 2122 ntBASIC20.56■□□□□ 0.88
COL4A5P29400 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 AL512638.1-201ENST00000457493 794 ntBASIC20.56■□□□□ 0.88
COL4A5P29400 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.56■□□□□ 0.88
COL4A5P29400 AC009118.2-201ENST00000613275 655 ntBASIC20.56■□□□□ 0.88
COL4A5P29400 AL138828.2-201ENST00000615812 383 ntBASIC20.56■□□□□ 0.88
COL4A5P29400 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A5P29400 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A5P29400 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A5P29400 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A5P29400 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A5P29400 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.55■□□□□ 0.88
COL4A5P29400 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL4A5P29400 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A5P29400 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
COL4A5P29400 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL4A5P29400 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL4A5P29400 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A5P29400 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A5P29400 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A5P29400 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A5P29400 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A5P29400 AC004790.1-201ENST00000612686 536 ntBASIC20.54■□□□□ 0.88
COL4A5P29400 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A5P29400 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL4A5P29400 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.54■□□□□ 0.88
COL4A5P29400 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A5P29400 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A5P29400 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A5P29400 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A5P29400 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A5P29400 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A5P29400 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A5P29400 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL4A5P29400 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL4A5P29400 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A5P29400 AC009477.1-201ENST00000452936 217 ntBASIC20.54■□□□□ 0.88
COL4A5P29400 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.54■□□□□ 0.88
COL4A5P29400 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A5P29400 MIR3909-201ENST00000579518 119 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms