Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 AC008677.1-201ENST00000519230 1561 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 COX5BP2-201ENST00000392354 334 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.12■□□□□ 0.01
COL8A1P27658 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
COL8A1P27658 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 AC079140.1-201ENST00000508039 487 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 IGHV3-71-201ENST00000523324 359 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 AC084346.2-201ENST00000607097 949 ntBASIC15.12■□□□□ 0.01
COL8A1P27658 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL8A1P27658 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.12■□□□□ 0.01
COL8A1P27658 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
COL8A1P27658 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 AL512356.2-201ENST00000546955 174 ntBASIC15.11■□□□□ 0.01
COL8A1P27658 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.11■□□□□ 0.01
COL8A1P27658 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.11■□□□□ 0.01
COL8A1P27658 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.11■□□□□ 0.01
COL8A1P27658 AC140878.1-201ENST00000565277 250 ntBASIC15.11■□□□□ 0.01
COL8A1P27658 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 AP001059.3-201ENST00000619053 235 ntBASIC15.11■□□□□ 0.01
COL8A1P27658 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL8A1P27658 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.11■□□□□ 0.01
COL8A1P27658 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL8A1P27658 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL8A1P27658 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms