Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.6■□□□□ 0.41
HLA-DQB2P05538 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DQB2P05538 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HLA-DQB2P05538 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 AL022326.1-202ENST00000641533 845 ntBASIC17.59■□□□□ 0.41
HLA-DQB2P05538 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DQB2P05538 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 LINC02012-201ENST00000608206 1725 ntBASIC17.58■□□□□ 0.41
HLA-DQB2P05538 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 EGFEM1P-202ENST00000431685 1563 ntBASIC17.58■□□□□ 0.41
HLA-DQB2P05538 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DQB2P05538 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQB2P05538 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.57■□□□□ 0.4
HLA-DQB2P05538 LINC00982-205ENST00000420957 435 ntBASIC17.57■□□□□ 0.4
HLA-DQB2P05538 ACTG1P4-201ENST00000425123 1122 ntBASIC17.57■□□□□ 0.4
HLA-DQB2P05538 AL450487.1-201ENST00000426799 995 ntBASIC17.57■□□□□ 0.4
HLA-DQB2P05538 PRYP5-201ENST00000451909 266 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms