Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LDLRP01130 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.82■□□□□ 0.28
LDLRP01130 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 GPAT2P1-201ENST00000444924 1672 ntBASIC16.81■□□□□ 0.28
LDLRP01130 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.81■□□□□ 0.28
LDLRP01130 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.81■□□□□ 0.28
LDLRP01130 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.81■□□□□ 0.28
LDLRP01130 AL139384.1-201ENST00000612143 3047 ntBASIC16.81■□□□□ 0.28
LDLRP01130 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LDLRP01130 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.81■□□□□ 0.28
LDLRP01130 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.81■□□□□ 0.28
LDLRP01130 AL671883.3-201ENST00000603274 991 ntBASIC16.81■□□□□ 0.28
LDLRP01130 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LDLRP01130 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.81■□□□□ 0.28
LDLRP01130 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.81■□□□□ 0.28
LDLRP01130 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.81■□□□□ 0.28
LDLRP01130 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LDLRP01130 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDLRP01130 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.8■□□□□ 0.28
LDLRP01130 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LDLRP01130 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.8■□□□□ 0.28
LDLRP01130 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.8■□□□□ 0.28
LDLRP01130 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.8■□□□□ 0.28
LDLRP01130 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 DRAXINP1-201ENST00000437611 948 ntBASIC16.8■□□□□ 0.28
LDLRP01130 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.8■□□□□ 0.28
LDLRP01130 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.8■□□□□ 0.28
LDLRP01130 KRT18P31-201ENST00000506277 1292 ntBASIC16.8■□□□□ 0.28
LDLRP01130 AP000867.3-201ENST00000524675 377 ntBASIC16.8■□□□□ 0.28
LDLRP01130 TPSP2-201ENST00000561760 610 ntBASIC16.8■□□□□ 0.28
LDLRP01130 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.8■□□□□ 0.28
LDLRP01130 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.8■□□□□ 0.28
LDLRP01130 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.8■□□□□ 0.28
LDLRP01130 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDLRP01130 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 AC106886.4-201ENST00000623557 2502 ntBASIC16.79■□□□□ 0.28
LDLRP01130 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 PCDHB19P-201ENST00000570871 2371 ntBASIC16.79■□□□□ 0.28
LDLRP01130 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
LDLRP01130 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LDLRP01130 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LDLRP01130 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDLRP01130 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.79■□□□□ 0.28
LDLRP01130 FOSL1P1-201ENST00000511041 816 ntBASIC16.79■□□□□ 0.28
LDLRP01130 DUTP2-201ENST00000519164 463 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms