Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN3O15551 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN3O15551 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN3O15551 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN3O15551 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN3O15551 AL049840.3-201ENST00000602669 611 ntBASIC18.97■□□□□ 0.63
CLDN3O15551 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 AC008735.5-201ENST00000623544 497 ntBASIC18.97■□□□□ 0.63
CLDN3O15551 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN3O15551 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLDN3O15551 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN3O15551 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN3O15551 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CLDN3O15551 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CLDN3O15551 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN3O15551 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLDN3O15551 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.96■□□□□ 0.63
CLDN3O15551 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.96■□□□□ 0.63
CLDN3O15551 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
CLDN3O15551 AC006557.2-201ENST00000592985 1240 ntBASIC18.96■□□□□ 0.63
CLDN3O15551 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN3O15551 MIR7706-201ENST00000613747 67 ntBASIC18.96■□□□□ 0.63
CLDN3O15551 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
CLDN3O15551 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN3O15551 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CLDN3O15551 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLDN3O15551 AC020916.1-201ENST00000587762 1774 ntBASIC18.96■□□□□ 0.63
CLDN3O15551 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.96■□□□□ 0.63
CLDN3O15551 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN3O15551 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN3O15551 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLDN3O15551 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 AL138688.1-201ENST00000624851 1594 ntBASIC18.95■□□□□ 0.62
CLDN3O15551 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CLDN3O15551 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN3O15551 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN3O15551 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.95■□□□□ 0.62
CLDN3O15551 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.95■□□□□ 0.62
CLDN3O15551 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CLDN3O15551 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.95■□□□□ 0.62
CLDN3O15551 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.95■□□□□ 0.62
CLDN3O15551 AC012640.2-201ENST00000561606 901 ntBASIC18.95■□□□□ 0.62
CLDN3O15551 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.95■□□□□ 0.62
CLDN3O15551 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.95■□□□□ 0.62
CLDN3O15551 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CLDN3O15551 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.95■□□□□ 0.62
CLDN3O15551 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLDN3O15551 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN3O15551 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CLDN3O15551 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CLDN3O15551 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLDN3O15551 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms