Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.85■□□□□ 0.29
UBFD1O14562 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.85■□□□□ 0.29
UBFD1O14562 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.85■□□□□ 0.29
UBFD1O14562 EGFEM1P-202ENST00000431685 1563 ntBASIC16.85■□□□□ 0.29
UBFD1O14562 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.85■□□□□ 0.29
UBFD1O14562 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
UBFD1O14562 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 AL135999.2-201ENST00000622438 1686 ntBASIC16.85■□□□□ 0.29
UBFD1O14562 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UBFD1O14562 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
UBFD1O14562 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.84■□□□□ 0.29
UBFD1O14562 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
UBFD1O14562 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 FAM220CP-201ENST00000395253 831 ntBASIC16.84■□□□□ 0.29
UBFD1O14562 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.84■□□□□ 0.29
UBFD1O14562 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.84■□□□□ 0.29
UBFD1O14562 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
UBFD1O14562 AC124947.2-201ENST00000547118 1133 ntBASIC16.84■□□□□ 0.29
UBFD1O14562 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 AC011840.4-201ENST00000578471 627 ntBASIC16.84■□□□□ 0.29
UBFD1O14562 IGHV3-41-201ENST00000613121 348 ntBASIC16.84■□□□□ 0.29
UBFD1O14562 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
UBFD1O14562 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UBFD1O14562 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.84■□□□□ 0.29
UBFD1O14562 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.84■□□□□ 0.29
UBFD1O14562 PCDH8P1-201ENST00000428983 2773 ntBASIC16.83■□□□□ 0.29
UBFD1O14562 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
UBFD1O14562 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
UBFD1O14562 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
UBFD1O14562 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
UBFD1O14562 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
UBFD1O14562 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.83■□□□□ 0.28
UBFD1O14562 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.83■□□□□ 0.28
UBFD1O14562 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 AL136038.3-201ENST00000561909 1096 ntBASIC16.83■□□□□ 0.28
UBFD1O14562 AC111152.3-201ENST00000569699 673 ntBASIC16.83■□□□□ 0.28
UBFD1O14562 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.83■□□□□ 0.28
UBFD1O14562 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
UBFD1O14562 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
UBFD1O14562 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 AL603756.1-201ENST00000606511 2163 ntBASIC16.82■□□□□ 0.28
UBFD1O14562 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.82■□□□□ 0.28
UBFD1O14562 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 AC132938.5-201ENST00000624980 1813 ntBASIC16.82■□□□□ 0.28
UBFD1O14562 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
UBFD1O14562 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.82■□□□□ 0.28
UBFD1O14562 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UBFD1O14562 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms