Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 AC055717.3-201ENST00000622967 595 ntBASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTDP1Q9Y5B0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 AP002414.1-201ENST00000391405 1147 ntBASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 KRT18P2-201ENST00000447938 1258 ntBASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 AC002310.6-201ENST00000624451 1377 ntBASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CTDP1Q9Y5B0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 AC018845.2-201ENST00000568326 409 ntBASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 AC010654.1-201ENST00000615722 808 ntBASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 PI4KAP1-204ENST00000612579 1703 ntBASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTDP1Q9Y5B0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 AC092183.1-201ENST00000469884 875 ntBASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 AC046185.3-201ENST00000623228 1824 ntBASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms