Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMA1Q9UHB6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 AC018695.7-201ENST00000624587 2492 ntBASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 AL671277.2-201ENST00000458060 996 ntBASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 AC090616.6-201ENST00000582640 721 ntBASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMA1Q9UHB6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 FRMD8P1-201ENST00000440433 1524 ntBASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC211429.1-201ENST00000415277 523 ntBASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 AC009336.1-201ENST00000608941 1553 ntBASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMA1Q9UHB6 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 AC022616.7-201ENST00000525383 220 ntBASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 AC011840.4-201ENST00000578471 627 ntBASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMA1Q9UHB6 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms