Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AC145285.3-201ENST00000564603 959 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AL353135.1-201ENST00000606729 504 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 PCDHB18P-201ENST00000524813 2368 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.46■□□□□ 0.38
DKK3Q9UBP4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
DKK3Q9UBP4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 AL135999.2-201ENST00000622438 1686 ntBASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LYSMD4-203ENST00000378904 2122 ntBASIC17.45■□□□□ 0.38
DKK3Q9UBP4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 GNAS-203ENST00000306120 1878 ntBASIC17.45■□□□□ 0.38
DKK3Q9UBP4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 NOC2LP2-201ENST00000407594 1944 ntBASIC17.45■□□□□ 0.38
DKK3Q9UBP4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DKK3Q9UBP4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 RPL13AP23-201ENST00000480739 586 ntBASIC17.44■□□□□ 0.38
DKK3Q9UBP4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 AC106730.1-201ENST00000566722 1090 ntBASIC17.44■□□□□ 0.38
DKK3Q9UBP4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
DKK3Q9UBP4 GPR89P-201ENST00000407924 1495 ntBASIC17.44■□□□□ 0.38
DKK3Q9UBP4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 TNRC18P3-201ENST00000441896 2691 ntBASIC17.43■□□□□ 0.38
DKK3Q9UBP4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
DKK3Q9UBP4 ELK2BP-201ENST00000415014 1224 ntBASIC17.43■□□□□ 0.38
DKK3Q9UBP4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms