Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.32■□□□□ 0.36
TREX1Q9NSU2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 AC106886.4-201ENST00000623557 2502 ntBASIC17.32■□□□□ 0.36
TREX1Q9NSU2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.32■□□□□ 0.36
TREX1Q9NSU2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AC105020.1-201ENST00000435356 2205 ntBASIC17.31■□□□□ 0.36
TREX1Q9NSU2 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 UPK3BP1-201ENST00000428678 509 ntBASIC17.31■□□□□ 0.36
TREX1Q9NSU2 NUS1P1-201ENST00000446295 882 ntBASIC17.31■□□□□ 0.36
TREX1Q9NSU2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TREX1Q9NSU2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AC079776.2-201ENST00000641154 1609 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 KRT16P4-201ENST00000453883 522 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 SIGLEC30P-201ENST00000455569 941 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AC138894.3-201ENST00000603787 634 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AL591684.3-201ENST00000605187 298 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AC090340.1-201ENST00000620778 4980 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 AC005915.1-201ENST00000624912 2018 ntBASIC17.3■□□□□ 0.36
TREX1Q9NSU2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TREX1Q9NSU2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 AGGF1P2-201ENST00000426656 2106 ntBASIC17.29■□□□□ 0.36
TREX1Q9NSU2 AC004817.3-201ENST00000602957 2129 ntBASIC17.29■□□□□ 0.36
TREX1Q9NSU2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 ACTG1P4-201ENST00000425123 1122 ntBASIC17.29■□□□□ 0.36
TREX1Q9NSU2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 FRMD8P1-201ENST00000440433 1524 ntBASIC17.29■□□□□ 0.36
TREX1Q9NSU2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TREX1Q9NSU2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms