Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 CRYGEP-201ENST00000412192 528 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 MCCD1P2-201ENST00000423228 335 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 DNAJB3-202ENST00000449667 1266 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 SIGLEC30P-201ENST00000455569 941 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 AC108073.2-201ENST00000464002 357 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 MIR4751-201ENST00000578027 74 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 AL096828.2-201ENST00000567259 1965 ntBASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM9SF3Q9HD45 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC211486.1-202ENST00000416371 468 ntBASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC211476.1-201ENST00000503899 468 ntBASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC019129.2-201ENST00000609837 1235 ntBASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 AC002310.6-201ENST00000624451 1377 ntBASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM9SF3Q9HD45 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 LINC00896-202ENST00000609602 2128 ntBASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 RPS15P9-201ENST00000494093 319 ntBASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC005829.1-201ENST00000570002 483 ntBASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC027796.2-201ENST00000575326 344 ntBASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC134043.2-201ENST00000624206 2238 ntBASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TM9SF3Q9HD45 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TM9SF3Q9HD45 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms