Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.36■□□□□ 0.37
COL25A1Q9BXS0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL25A1Q9BXS0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 MEP1AP4-201ENST00000423244 1087 ntBASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 AC142381.1-201ENST00000426099 345 ntBASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 AL138918.1-201ENST00000568306 659 ntBASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL25A1Q9BXS0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 RPL13AP20-201ENST00000459725 609 ntBASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 AC010328.2-201ENST00000597698 1111 ntBASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 AL022328.3-201ENST00000607943 679 ntBASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 RPSAP52-203ENST00000622976 1023 ntBASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL25A1Q9BXS0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.33■□□□□ 0.37
COL25A1Q9BXS0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 SLC25A47P1-201ENST00000531577 414 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC023310.3-201ENST00000557027 670 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC100756.1-201ENST00000562736 682 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC138749.3-201ENST00000567691 622 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC093726.1-201ENST00000608064 963 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC116165.1-201ENST00000611806 668 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 AC079416.2-201ENST00000625035 1193 ntBASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL25A1Q9BXS0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms