Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 AC078925.2-201ENST00000624013 1973 ntBASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 AC034232.1-201ENST00000506026 1064 ntBASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 AC007950.2-201ENST00000615045 2347 ntBASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC28BQ9BUN5 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 AC099063.4-201ENST00000641099 1602 ntBASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 TSPY7P-201ENST00000431358 1114 ntBASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 FAM87A-204ENST00000613235 858 ntBASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC28BQ9BUN5 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 KRT8P9-201ENST00000558927 1449 ntBASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC28BQ9BUN5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms