Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AC124947.2-201ENST00000547118 1133 ntBASIC17.39■□□□□ 0.37
CPNE1Q99829 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.39■□□□□ 0.37
CPNE1Q99829 AC090616.6-201ENST00000582640 721 ntBASIC17.39■□□□□ 0.37
CPNE1Q99829 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.39■□□□□ 0.37
CPNE1Q99829 LINC01023-201ENST00000606054 436 ntBASIC17.39■□□□□ 0.37
CPNE1Q99829 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.39■□□□□ 0.37
CPNE1Q99829 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CPNE1Q99829 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.39■□□□□ 0.37
CPNE1Q99829 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CPNE1Q99829 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CPNE1Q99829 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CPNE1Q99829 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 FAM220CP-201ENST00000395253 831 ntBASIC17.38■□□□□ 0.37
CPNE1Q99829 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.38■□□□□ 0.37
CPNE1Q99829 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 AC022616.7-201ENST00000525383 220 ntBASIC17.38■□□□□ 0.37
CPNE1Q99829 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 LINC01238-205ENST00000567549 1107 ntBASIC17.38■□□□□ 0.37
CPNE1Q99829 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 AC005336.2-201ENST00000593183 939 ntBASIC17.38■□□□□ 0.37
CPNE1Q99829 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CPNE1Q99829 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CPNE1Q99829 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CPNE1Q99829 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE1Q99829 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CPNE1Q99829 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CPNE1Q99829 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 AL845331.1-201ENST00000424978 1190 ntBASIC17.37■□□□□ 0.37
CPNE1Q99829 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CPNE1Q99829 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE1Q99829 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CPNE1Q99829 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE1Q99829 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 AC011840.4-201ENST00000578471 627 ntBASIC17.37■□□□□ 0.37
CPNE1Q99829 STK25P1-201ENST00000585406 838 ntBASIC17.37■□□□□ 0.37
CPNE1Q99829 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE1Q99829 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE1Q99829 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPNE1Q99829 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 KRT8P10-201ENST00000450021 1447 ntBASIC17.37■□□□□ 0.37
CPNE1Q99829 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE1Q99829 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE1Q99829 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
CPNE1Q99829 FLJ38576-201ENST00000623820 2459 ntBASIC17.37■□□□□ 0.37
CPNE1Q99829 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE1Q99829 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE1Q99829 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE1Q99829 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE1Q99829 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE1Q99829 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE1Q99829 PCDHA14-201ENST00000506751 2298 ntBASIC17.36■□□□□ 0.37
CPNE1Q99829 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE1Q99829 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE1Q99829 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE1Q99829 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms