Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC112907.2-201ENST00000448639 330 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC092647.4-201ENST00000457211 535 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 LY6E-213ENST00000522528 606 ntTSL 3 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 Z83836.1-201ENST00000624605 1642 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
LINC00477Q96M19 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC084018.2-201ENST00000613093 2607 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 LINC02012-201ENST00000608206 1725 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 AC093525.9-201ENST00000624961 1746 ntBASIC13.05□□□□□ -0.32
LINC00477Q96M19 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00477Q96M19 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 AK4P3-201ENST00000418260 669 ntBASIC13.04□□□□□ -0.32
LINC00477Q96M19 AC103564.2-201ENST00000432853 1299 ntBASIC13.04□□□□□ -0.32
LINC00477Q96M19 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 AC111152.3-201ENST00000569699 673 ntBASIC13.04□□□□□ -0.32
LINC00477Q96M19 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
LINC00477Q96M19 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00477Q96M19 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC010460.3-201ENST00000511359 1579 ntBASIC13.03□□□□□ -0.32
LINC00477Q96M19 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC005521.1-201ENST00000393351 872 ntBASIC13.03□□□□□ -0.32
LINC00477Q96M19 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC122714.2-201ENST00000502787 707 ntBASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 AC066615.1-201ENST00000640911 628 ntBASIC13.03□□□□□ -0.32
LINC00477Q96M19 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms