Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
BRF1Q92994 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
BRF1Q92994 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
BRF1Q92994 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
BRF1Q92994 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.46■□□□□ 0.87
BRF1Q92994 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.46■□□□□ 0.87
BRF1Q92994 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
BRF1Q92994 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRF1Q92994 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
BRF1Q92994 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
BRF1Q92994 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.45■□□□□ 0.86
BRF1Q92994 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
BRF1Q92994 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.45■□□□□ 0.86
BRF1Q92994 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.45■□□□□ 0.86
BRF1Q92994 MIR3652-201ENST00000579335 131 ntBASIC20.45■□□□□ 0.86
BRF1Q92994 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRF1Q92994 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
BRF1Q92994 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
BRF1Q92994 AC099398.1-201ENST00000567919 2776 ntBASIC20.45■□□□□ 0.86
BRF1Q92994 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.44■□□□□ 0.86
BRF1Q92994 AC060834.1-201ENST00000443027 2032 ntBASIC20.44■□□□□ 0.86
BRF1Q92994 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
BRF1Q92994 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
BRF1Q92994 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 ABCD1P5-201ENST00000445663 754 ntBASIC20.44■□□□□ 0.86
BRF1Q92994 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 KRT16P4-201ENST00000453883 522 ntBASIC20.44■□□□□ 0.86
BRF1Q92994 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.44■□□□□ 0.86
BRF1Q92994 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.44■□□□□ 0.86
BRF1Q92994 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.44■□□□□ 0.86
BRF1Q92994 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
BRF1Q92994 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRF1Q92994 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.43■□□□□ 0.86
BRF1Q92994 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.43■□□□□ 0.86
BRF1Q92994 NUS1P1-201ENST00000446295 882 ntBASIC20.43■□□□□ 0.86
BRF1Q92994 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 AC132008.2-207ENST00000454517 770 ntBASIC20.43■□□□□ 0.86
BRF1Q92994 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.43■□□□□ 0.86
BRF1Q92994 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.43■□□□□ 0.86
BRF1Q92994 AL732292.2-201ENST00000609649 430 ntBASIC20.43■□□□□ 0.86
BRF1Q92994 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRF1Q92994 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
BRF1Q92994 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms