Protein–RNA interactions for Protein: Q8NFR7

CCDC148, Coiled-coil domain-containing protein 148, humanhuman

Predictions only

Length 591 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC148Q8NFR7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC148Q8NFR7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 FAAHP1-202ENST00000446499 1238 ntBASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 EMBP1-201ENST00000458200 901 ntBASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 RN7SL510P-201ENST00000581311 263 ntBASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC148Q8NFR7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 NKAPP1-205ENST00000585790 367 ntBASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 AL022326.1-202ENST00000641533 845 ntBASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC148Q8NFR7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC148Q8NFR7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC148Q8NFR7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms